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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8053812_8054683_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8053812 - 8054683
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCTT
5'SS Class:
major
3'SS Sequence:
TCTGCTTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
TCTGCTTTATCA
Flanking Amino Acid:
SYGIGFATSGRYWMNLTPSD
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.5
42.1
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
78.3
0.64
0.9
77.6
35.4
Minor 5ss
42.1
-0.9
3.5
64.4
47
Minor BPS
60.8
0.34
1.7
70.42
42.6

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015227
8047846 - 8061704
13859