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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8055881_8057216_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8055881 - 8057216
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATT
Flanking Amino Acid:
WLLNVACMRTGIVFIPGTSQ
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
79.9
27.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87.9
0.85
0.8
80.2
37.3
Minor 5ss
29.9
-2.3
2.7
35.8
41.1
Minor BPS
73.9
0.83
1.3
86.99
32

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015227
8047846 - 8061704
13859
ENSAPLT00000042153
8047846 - 8057875
10030
ENSAPLT00000031680
8052485 - 8057875
5391