About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8057428_8057674_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8057428 - 8057674
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTCT
5'SS Class:
major
3'SS Sequence:
TATTGCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCATTTATAATA
Flanking Amino Acid:
VLDKWSQLEKDGKRPANPAF
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.9
40.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
72.8
0.51
0.9
63.7
42.4
Minor 5ss
38
-1.3
3.6
56.7
47.6
Minor BPS
55.4
0.17
1.5
64.11
36.8

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042153
8047846 - 8057875
10030
ENSAPLT00000031680
8052485 - 8057875
5391
ENSAPLT00000015227
8047846 - 8061704
13859