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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8057871_8061687_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8057871 - 8061687
Intron Length:
3817

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTCTCCTT
5'SS Class:
weak_major
3'SS Sequence:
CATTTATCATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTGCACT
Flanking Amino Acid:
MLHSARSFVKSWIPQ
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.4
0.2
1.4
56.6
47.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
51
0.02
1.7
63.9
41.5
Minor 5ss
28.8
-2.4
4.2
48.6
47
Minor BPS
59.9
0.39
1.9
81.77
39.5

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015227
8047846 - 8061704
13859