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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8071422_8071772_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8071422 - 8071772
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACT|GCAAAGGTA
5'SS Class:
weak_major
3'SS Sequence:
CAAACCTGCTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TGATCCCAAACC
Flanking Amino Acid:
VDGSREDPIDFCSSSSSLQF
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.5
62.4
39.2
Major BPS
75
0.62
1
65.3
41.5
Major PPT
53.9
0.09
1
50.7
38.6
Minor 5ss
24.7
-2.9
4.5
46.5
48.9
Minor BPS
54.2
0.11
2
69.12
41.7

Associated Gene:

Gene:
PDILT
Ensembl Gene ID:
ENSAPLG00000013853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031036
8069163 - 8084520
15358