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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8071428_8074228_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8071428 - 8074228
Intron Length:
2801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTATTTCAATT
Flanking Amino Acid:
GSREDPIDCKGVRQASAFIT
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
88.2
0.86
0.6
84.1
24.1
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
56.8
0.29
1.5
73.18
38

Associated Gene:

Gene:
PDILT
Ensembl Gene ID:
ENSAPLG00000013853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014454
8055695 - 8084520
28826
ENSAPLT00000047927
8069163 - 8084520
15358
ENSAPLT00000028753
8055799 - 8084520
28722