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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8071811_8076304_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8071811 - 8076304
Intron Length:
4494

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTA|GCATGACTG
5'SS Class:
weak_major
3'SS Sequence:
AGTTTTTTGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCGCAA
U12 Branch Point Sequence:
TTCGCAATAACA
Flanking Amino Acid:
SSSSLQFPQLTAKDVPEMPF
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.3
51.8
44.7
Major BPS
60.8
0.27
1.4
71.6
36.4
Major PPT
55.4
0.12
1.8
69.7
45.4
Minor 5ss
33.2
-1.9
4.2
49.1
42.3
Minor BPS
51.9
0.06
2
69.46
42.6

Associated Gene:

Gene:
PDILT
Ensembl Gene ID:
ENSAPLG00000013853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031036
8069163 - 8084520
15358