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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8078537_8079483_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8078537 - 8079483
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAT
5'SS Class:
major
3'SS Sequence:
TCTTTATTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTCTTTATT
Flanking Amino Acid:
KSAAMEFRGKITFVLVNTNE
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
80.8
32.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.4
0.73
0.9
82.3
33
Minor 5ss
39.8
-1.1
2.5
51.4
45.2
Minor BPS
69
0.68
1.6
83.03
38.5

Associated Gene:

Gene:
PDILT
Ensembl Gene ID:
ENSAPLG00000013853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047927
8069163 - 8084520
15358
ENSAPLT00000031036
8069163 - 8084520
15358
ENSAPLT00000028753
8055799 - 8084520
28722
ENSAPLT00000014454
8055695 - 8084520
28826