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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8080112_8081466_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8080112 - 8081466
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTACATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
NKTMTVFVMFYAPWSHDCRK
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
74.4
34.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.7
0.69
0.8
74.4
35.2
Minor 5ss
39.8
-1.1
3.4
58.5
40.5
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
PDILT
Ensembl Gene ID:
ENSAPLG00000013853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031036
8069163 - 8084520
15358
ENSAPLT00000028753
8055799 - 8084520
28722
ENSAPLT00000014454
8055695 - 8084520
28826
ENSAPLT00000047927
8069163 - 8084520
15358