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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8081710_8084452_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8081710 - 8084452
Intron Length:
2743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGTGCGCA
5'SS Class:
major
3'SS Sequence:
TCTTTGGTCTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
TCTGGCTTTACA
Flanking Amino Acid:
HSCTLRGGWLEIAIPDDRAD
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
54.7
38.6
Major BPS
58.8
0.22
1.6
75
40
Major PPT
56.3
0.14
1.7
68.5
42.1
Minor 5ss
36.8
-1.5
3.2
38.5
46.7
Minor BPS
50
-0
2.2
66.85
45.6

Associated Gene:

Gene:
PDILT
Ensembl Gene ID:
ENSAPLG00000013853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047927
8069163 - 8084520
15358
ENSAPLT00000031036
8069163 - 8084520
15358
ENSAPLT00000028753
8055799 - 8084520
28722
ENSAPLT00000014454
8055695 - 8084520
28826