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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_81116_81225_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81116 - 81225
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAAAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAAACATTAACT
Flanking Amino Acid:
DIKQSHMEKQIICKTCLSQS
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
61.3
0.26
1
57.2
36.7
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
67.1
0.61
1.6
80.92
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015269
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015916
78964 - 93511
14548