Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_81510_82114_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81510 - 82114

Intron Length:

605

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTATC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACAGTTTTAATT

Flanking Amino Acid:

VAVTCYFCFTKVKKEWWDQI

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

0.9

80.7

31.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.4

0.75

0.8

77.1

31.6

Minor 5ss

48.1

-0.2

2.4

63.2

35.1

Minor BPS

57.7

0.32

1.3

65.81

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015269

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015916

78964 - 93511

14548