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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8174367_8188321_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8174367 - 8188321
Intron Length:
13955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATGTCTTAATG
Flanking Amino Acid:
YSLLLCLGLPANILTVIILS
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.6
0.58
0.8
69
31.7
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
67.6
0.41
1.4
67.77
40.4

Associated Gene:

Gene:
GPR139
Ensembl Gene ID:
ENSAPLG00000001473
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001462
8174246 - 8189256
15011