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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8258100_8262543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8258100 - 8262543
Intron Length:
4444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAC
Flanking Amino Acid:
KAFSMDEHNAALRTAGFRNG
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
70.9
37.9
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
70.1
0.61
1.3
74.65
36.2

Associated Gene:

Gene:
GPRC5B
Ensembl Gene ID:
ENSAPLG00000013820
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014392
8257094 - 8264079
6986