About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8262657_8264034_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8262657 - 8264034
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCCTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATCCTTATTT
Flanking Amino Acid:
EMAVVLNGGTIPTAPPSYTG
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.5
0.8
0.8
80.4
30.4
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
75.7
0.89
1.5
88.91
36

Associated Gene:

Gene:
GPRC5B
Ensembl Gene ID:
ENSAPLG00000013820
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014392
8257094 - 8264079
6986