About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8300673_8300794_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8300673 - 8300794
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTCCCATTATC
Flanking Amino Acid:
ACDFLTEWLYNHNPKRKDES
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
75.4
0.57
0.9
74.3
34
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
55.7
0.16
1.9
73.54
37

Associated Gene:

Gene:
IQCK
Ensembl Gene ID:
ENSAPLG00000013815
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014386
8279954 - 8310805
30852