About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8300848_8306929_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8300848 - 8306929
Intron Length:
6082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAATAAATAATT
Flanking Amino Acid:
HQAKKEKCFERKRTKFIACD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
79.2
0.66
0.8
77.2
31.6
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
48
-0
2
69.97
40.1

Associated Gene:

Gene:
IQCK
Ensembl Gene ID:
ENSAPLG00000013815
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014386
8279954 - 8310805
30852