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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_830746_840473_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
830746 - 840473
Intron Length:
9728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGAATTTAATC
Flanking Amino Acid:
DIEKDVLTVVVRDAKNLVPM
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.5
0.73
0.7
80.9
24.3
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
60.1
0.3
1.5
67.78
38.1

Associated Gene:

Gene:
PRKCB
Ensembl Gene ID:
ENSAPLG00000008998
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036133
793533 - 903744
110212
ENSAPLT00000009388
788846 - 903744
114899