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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8319260_8321616_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8319260 - 8321616
Intron Length:
2357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTTTGTTTCACA
Flanking Amino Acid:
TEVYGSKMQTNTKIGQWSTA
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
74.8
41.3
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
88
0.86
0.7
83.5
31.6
Minor 5ss
45.9
-0.4
2.5
60.4
44.2
Minor BPS
59.4
0.29
2.2
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040293
8318658 - 8321928
3271