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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8333383_8334174_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8333383 - 8334174
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAG
U12 Branch Point Sequence:
ATCTCTTTAGCC
Flanking Amino Acid:
QETYIYHVDKVDSNDTLYGG
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
59.9
0.25
1.6
59.6
46.8
Major PPT
86.7
0.82
0.7
81.5
30.6
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
66.2
0.49
1.5
72.43
39

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085