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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8349650_8351477_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8349650 - 8351477
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTTTCTTCTATA
Flanking Amino Acid:
AALINGFIKMVSFGRDFEQQ
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
82.1
0.72
0.8
77.1
31.8
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
52.9
0.08
1.8
68
38.3

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085