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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8351542_8354202_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8351542 - 8354202
Intron Length:
2661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTATCT
Flanking Amino Acid:
HICKTMHDSVNALTLEDEKR
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
80.6
27.4
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
77.8
0.63
0.9
72.8
37.3
Minor 5ss
43.2
-0.7
3.1
56.6
42
Minor BPS
58.5
0.35
1.9
79.74
41.5

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085