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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8354284_8356025_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8354284 - 8356025
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
AAACATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTAAAAC
Flanking Amino Acid:
VCKCIMESFIKHQQESTKDP
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
69.9
0.45
1
61.6
43.2
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
66.4
0.49
1.7
79.08
36.2

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085