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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8358980_8359212_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8358980 - 8359212
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTGCTTTAAAT
Flanking Amino Acid:
KECDESGFPKHLLFRSLGLN
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.8
0.71
0.9
78.6
39.1
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
68.4
0.66
1.5
80.63
41.5

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085