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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8359325_8361250_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8359325 - 8361250
Intron Length:
1926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGCTGTTGAACT
Flanking Amino Acid:
MMERCKKLGNNALLLNSVMS
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
73.3
0.53
0.9
67.7
38.3
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
54.3
0.21
1.9
73.22
43.7

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085