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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8360976_8362510_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8360976 - 8362510
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGTGCTAA
5'SS Class:
major
3'SS Sequence:
TGTTCTATATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TGTTCTATATCA
Flanking Amino Acid:
CIAYRAPEVSNRVSDSWLFV
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1
62.7
33.7
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
76.4
0.59
1
75.4
38.2
Minor 5ss
45.5
-0.5
2.7
54.6
44.4
Minor BPS
57
0.22
1.9
73.09
38.6

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029103
8360807 - 8376864
16058