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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8362642_8363293_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8362642 - 8363293
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATTTCAACA
Flanking Amino Acid:
FFDFLLTFKQIHGDTVQNQL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.3
0.7
0.9
77.8
35.2
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
64.1
0.44
1.5
75.89
35.2

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029103
8360807 - 8376864
16058
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085