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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8365351_8366372_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8365351 - 8366372
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGAGTA
5'SS Class:
major
3'SS Sequence:
AAAATCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAAATCTTAACA
Flanking Amino Acid:
ILKCNKFLSKTGISECLPRL
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
75.2
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
62.2
0.28
1.1
55.5
43.5
Minor 5ss
35.4
-1.7
3.5
46.5
42.5
Minor BPS
67.5
0.55
1.3
68.79
36.6

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000029103
8360807 - 8376864
16058
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085