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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8366421_8366811_R

Intron Information:

Intron Rank:
9
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
8366421 - 8366811
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
GGCTTCGTTTTAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGGTCCTTAACT
Flanking Amino Acid:
IASIRELIPRFYVEAAILKC
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.4
-0
1.2
48
43
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
69.1
0.43
1
65.6
41
Minor 5ss
90.7
1.37
1.1
87
29.8
Minor BPS
87.3
1.25
1
93.02
35.3

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000029103
8360807 - 8376864
16058
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085