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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8366909_8368530_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8366909 - 8368530
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
ATGTACCTATTT
Flanking Amino Acid:
MCMDNRVSLSDNFSPESVND
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
84.1
30.2
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
49.3
-0
2.5
67.2
43.9
Minor BPS
47
-0.1
2
68.14
42.7

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000029103
8360807 - 8376864
16058
ENSAPLT00000024949
8325703 - 8373969
48267
ENSAPLT00000013785
8325703 - 8380787
55085