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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8369702_8372721_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8369702 - 8372721
Intron Length:
3020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
KVKALKIVIQCSKLLSDTTV
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013785
8325703 - 8380787
55085
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000029103
8360807 - 8376864
16058