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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8374921_8375266_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8374921 - 8375266
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TGTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTAAAAGT
Flanking Amino Acid:
RYTTTEKLSINLYMGSEKGK
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
39.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.2
0.72
0.8
76.6
36.5
Minor 5ss
35.6
-1.6
3.3
49.5
41.3
Minor BPS
51.3
0.12
2.2
80.33
41.9

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029103
8360807 - 8376864
16058