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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8375390_8375698_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8375390 - 8375698
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAACT
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTGTATTTAACA
Flanking Amino Acid:
ADPVITTATMDNTRKKRDKD
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
72.7
36.1
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
77.4
0.62
0.7
72.5
25.8
Minor 5ss
36.3
-1.5
3
48.1
41.5
Minor BPS
73.4
0.73
1.4
80.14
35.8

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029103
8360807 - 8376864
16058
ENSAPLT00000013785
8325703 - 8380787
55085
ENSAPLT00000040188
8325703 - 8380787
55085