About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8375867_8376798_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8375867 - 8376798
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTGTTAAAT
Flanking Amino Acid:
GDYHPLKPITVTESKTKKMS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.7
0.8
0.8
77.4
36.3
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
65.6
0.57
2.1
88.72
36.1

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000029103
8360807 - 8376864
16058
ENSAPLT00000013785
8325703 - 8380787
55085