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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8376899_8380701_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8376899 - 8380701
Intron Length:
3803

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCCCGGGGC
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TACCCTTTAATC
Flanking Amino Acid:
EPVGGGRGRAGHARSRNYVS
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
59.3
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.63
1
82.6
32.8
Minor 5ss
13.1
-4.3
3.7
14.9
28.8
Minor BPS
68
0.54
1.2
68.7
37

Associated Gene:

Gene:
VPS35L
Ensembl Gene ID:
ENSAPLG00000013151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040188
8325703 - 8380787
55085
ENSAPLT00000013785
8325703 - 8380787
55085