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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8388736_8389328_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8388736 - 8389328
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TATATTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
APVHRLLCRQGTPKTSMKGV
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
67.7
0.4
1
68.1
42.1
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274