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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8389389_8389904_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8389389 - 8389904
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
IIIKQKSPESRVLQPNQGQN
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
31.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
77.6
0.62
1
73.3
40.9
Minor 5ss
27
-2.6
3
31.7
42.6
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274