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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8389968_8390557_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8389968 - 8390557
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
GTTGTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TGTGACTTAAAT
Flanking Amino Acid:
QKSLDRKKYMKASEMGMPSK
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.5
33.4
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
78
0.63
0.9
70.2
41.3
Minor 5ss
40.8
-1
3
49.9
40.8
Minor BPS
62.2
0.46
1.8
79.4
42

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274