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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8390638_8391195_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8390638 - 8391195
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTTAT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
TTTGCTTTTATA
Flanking Amino Acid:
VRKEKMLRQMDKVKSPRERA
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.8
34.5
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
84.9
0.79
0.7
80.3
31.8
Minor 5ss
35.2
-1.7
3.2
45
45.5
Minor BPS
62
0.37
1.7
74.49
37.5

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274