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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8391694_8391973_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8391694 - 8391973
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGGTGCTTAATC
Flanking Amino Acid:
KLKHLKQTVKDTMEFIRNFQ
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
72.3
31.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.3
0.52
0.8
64.7
30.8
Minor 5ss
40.9
-1
3
52.6
38.2
Minor BPS
64.3
0.43
1.8
70.79
41

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274