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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8392091_8392470_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8392091 - 8392470
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
SNRIKTRWTQVFSPEIQMKF
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
81.9
0.72
0.9
86.8
24.5
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274