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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8393930_8394070_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8393930 - 8394070
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
CTTTAATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GATTCTTTAATT
Flanking Amino Acid:
QEREQEKLQKELEEQERKLK
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.8
0.56
0.8
69.2
35.6
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
79.7
1.01
1
85.91
33.9

Associated Gene:

Gene:
CCP110
Ensembl Gene ID:
ENSAPLG00000012915
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013452
8388645 - 8399918
11274