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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8402033_8402622_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8402033 - 8402622
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGCC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAA
U12 Branch Point Sequence:
TGTTGTGTAAGT
Flanking Amino Acid:
PENTLAAIRQAAENGATGVE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
67.6
39.2
Major BPS
48.9
-0
1.5
49.4
46
Major PPT
81.5
0.71
0.9
86.5
24.9
Minor 5ss
33
-1.9
3.2
42.8
44.3
Minor BPS
45.8
-0.2
2.5
71.8
45.5

Associated Gene:

Gene:
GDE1
Ensembl Gene ID:
ENSAPLG00000012889
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013422
8401778 - 8405422
3645