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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8402799_8403018_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8402799 - 8403018
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGGAA
5'SS Class:
major
3'SS Sequence:
TCTGTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTGTTCCTACAG
Flanking Amino Acid:
RLNPSAKHRLWSKFQGEKVP
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.3
35.3
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
82.8
0.74
0.8
76.6
32.2
Minor 5ss
28
-2.5
3.5
33.9
44.2
Minor BPS
43.3
-0.6
2
48.35
45.1

Associated Gene:

Gene:
GDE1
Ensembl Gene ID:
ENSAPLG00000012889
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013422
8401778 - 8405422
3645