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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8404047_8404676_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8404047 - 8404676
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
CTTGATCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTGAATT
Flanking Amino Acid:
CSFMPDVVYKMRQADRNVVT
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.66
0.9
69.5
41.4
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
62.5
0.47
1.5
79.72
37

Associated Gene:

Gene:
GDE1
Ensembl Gene ID:
ENSAPLG00000012889
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013422
8401778 - 8405422
3645