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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_84040_84437_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84040 - 84437
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ACTTCCTTACTT
Flanking Amino Acid:
KYWSKQHPGEVSIKSINYQA
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
87.3
0.84
0.7
84.9
29.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
70.4
0.72
1.6
81.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015269
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015916
78964 - 93511
14548