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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8404889_8405274_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8404889 - 8405274
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTCCTCTTACAG
Flanking Amino Acid:
AFLIQKNFVSQDYVRHWSSK
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
69.2
0.48
1
61
37.1
Major PPT
87.5
0.84
0.7
85.4
29.3
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
49.5
-0.1
1.8
57.38
44.1

Associated Gene:

Gene:
GDE1
Ensembl Gene ID:
ENSAPLG00000012889
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013422
8401778 - 8405422
3645