Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_841584_854240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

841584 - 854240

Intron Length:

12657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GAGGTTATAATC

Flanking Amino Acid:

PGADKGPASDDPRSKHKFKI

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

83.5

27.9

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

77.7

0.62

0.8

70.3

36.4

Minor 5ss

38.5

-1.3

2.8

50.4

39.3

Minor BPS

45.3

-0.3

1.6

48.15

35.9

Associated Gene:

Gene:

PRKCB

Ensembl Gene ID:

ENSAPLG00000008998

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036133

793533 - 903744

110212

ENSAPLT00000009388

788846 - 903744

114899