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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8416282_8417972_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8416282 - 8417972
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TACCATTTAACA
Flanking Amino Acid:
LGSFFGEFLRRIIGTTVFVS
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
60.7
0.33
1.5
67.05
39

Associated Gene:

Gene:
TMC5
Ensembl Gene ID:
ENSAPLG00000012753
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022050
8407344 - 8424043
16700
ENSAPLT00000013308
8407698 - 8424046
16349