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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8418536_8419757_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8418536 - 8419757
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTACCTAAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAC
U12 Branch Point Sequence:
TTACTGTTACTT
Flanking Amino Acid:
MFLPIHTHVLLNIILKISII
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.3
58.6
42
Major BPS
56.4
0.16
1
52.6
34.2
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
42.4
-0.8
2.9
59.9
44.8
Minor BPS
47
-0.1
2.2
69.41
42

Associated Gene:

Gene:
TMC5
Ensembl Gene ID:
ENSAPLG00000012753
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013308
8407698 - 8424046
16349